MmuALTA0003719-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000061048 | Cdh3
Description
cadherin 3 [Source:MGI Symbol;Acc:MGI:88356]
Coordinates
chr8:106511224-106535481:+
Coord C1 exon
chr8:106511224-106511341
Coord A exon
chr8:106535408-106535410
Coord C2 exon
chr8:106535411-106535481
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ACTCTCTCTCTTCCTCACAGTAG
3' ss Score
8.57
Exon sequences
Seq C1 exon
GTTTGCTGGCTACGCAGCGTGGTCTCCGAGCCCTACCGAGCGGGCTTCATCGGGGAGGCTGGAGTGACCTTGGAGGTGGAAGGAACTGACCTGGAGCCGAGCCAAGTTCTGGGGAAAG
Seq A exon
TAG
Seq C2 exon
CCTTGGCTGGACAGGGCATGCACCATGCAGACAATGGAGACATCATTATGCTGACTAGGGGGACAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061048-1-2,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTGGAGTGACCTTGGAG
R:
TCTCCATTGTCTGCATGGTGC
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types