MmuALTA0003982-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000026365 | Cfh
Description
complement component factor h [Source:MGI Symbol;Acc:MGI:88385]
Coordinates
chr1:142005335-142009183:-
Coord C1 exon
chr1:142009010-142009183
Coord A exon
chr1:142005518-142005520
Coord C2 exon
chr1:142005335-142005517
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TTTATACAGTATTTCTGCAGCAG
3' ss Score
1.84
Exon sequences
Seq C1 exon
AAAGAGAATGCAGTGTTCCCACTCTAGACCGAAAACTAGTCGTTTCCCCCAGAAAAGAAAAATACAGAGTTGGAGATTTGTTGGAATTCTCCTGCCATTCAGGACACAGAGTTGGGCCAGATTCAGTGCAATGCTACCACTTTGGATGGTCTCCTGGTTTCCCTACATGTAAAG
Seq A exon
CAG
Seq C2 exon
GTCAAGTAGCATCATGTGCACCACCTCTTGAAATTCTTAATGGGGAAATTAATGGAGCAAAAAAAGTTGAATACAGCCATGGTGAAGTGGTGAAATATGATTGCAAACCTAGATTCCTACTGAAGGGACCCAATAAAATCCAGTGTGTTGATGGGAATTGGACAACCTTGCCTGTATGTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026365-12-12,12-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.5)
A:
NA
C2:
PF0008415=Sushi=WD(100=88.7)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCAGATTCAGTGCAATG
R:
TCAAGAGGTGGTGCACATGATG
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: