MmuALTA0004232-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000033082 | Clec1a
Description
C-type lectin domain family 1, member a [Source:MGI Symbol;Acc:MGI:2444151]
Coordinates
chr6:129379910-129382291:-
Coord C1 exon
chr6:129382140-129382291
Coord A exon
chr6:129379977-129380028
Coord C2 exon
chr6:129379910-129379976
Length
52 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTCTTGTGTGCCTTTCACAGGAT
3' ss Score
10.17
Exon sequences
Seq C1 exon
GACATAGATGCAGTCCTTGCCCAGAAAAATGGAAGTGGTATGGAGACAAATGTTACCAGTTCTATAAAGAAAGTAAGAACTGGCAGAGTTGTGAATACTTCTGCCTGGCTGACAATGCCACCATGCTGAAGATAAGCACACAGGAAGAGCTG
Seq A exon
GATTTTGCCATGCCCCAGAGCTACTCTGAGTTTTTCTACTCTTATTGGACAG
Seq C2 exon
GGCTCTCCCGCAATGGCAGTGGCAAAGCCTGGCTGTGGACAGATGGGACACCTTACTCCTTTGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033082-3-4,3-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF043759=HemX=PD(21.7=58.8),PF0005916=Lectin_C=PU(25.5=52.9)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACTGGCAGAGTTGTGAA
R:
AAGGTGTCCCATCTGTCCACA
Band lengths:
132-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: