MmuALTA0004248-2/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000068917 | Clk2
Description
CDC-like kinase 2 [Source:MGI Symbol;Acc:MGI:1098669]
Coordinates
chr3:89167035-89168923:+
Coord C1 exon
chr3:89167035-89167204
Coord A exon
chr3:89168698-89168751
Coord C2 exon
chr3:89168752-89168923
Length
54 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TATTTGTTATCCAACAGCAGCTA
3' ss Score
1.17
Exon sequences
Seq C1 exon
ATGCCCCATCCCCGAAGGTACCATTCCTCAGAGCGAGGTAGCCGGGGGAGTTACCACGAACACTATCAGAGCCGAAAGCATAAGCGAAGAAGAAGTCGCTCCTGGTCAAGTAGCAGTGACCGGACAAGGCGGCGGCGGAGGGAGGACAGCTACCACGTTCGGTCCCGAAG
Seq A exon
CTATGATGACCATTCGTCCGATCGGCGGCTGTACGATCGGCGGTACTGTGGCAG
Seq C2 exon
CTACAGGCGCAATGACTACAGCCGGGACAGAGGGGAGGCTTACTACGACACAGACTTTCGGCAGTCCTATGAATACCATCGAGAGAACAGCAGTTACCGAAGCCAGCGCAGCAGCCGAAGGAAACACAGAAGGCGGAGGAGACGGAGCCGGACATTCAGCCGCTCATCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068917-6-7,6-6,6-5,6-4-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.659
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAGTCGCTCCTGGTCA
R:
GTGTCGTAGTAAGCCTCCCCT
Band lengths:
134-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types