MmuALTA0004714-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000028804 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:MGI Symbol;Acc:MGI:2386401]
Coordinates
chr4:128229819-128232164:+
Coord C1 exon
chr4:128229819-128229998
Coord A exon
chr4:128232099-128232101
Coord C2 exon
chr4:128232102-128232164
Length
3 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TTCCCCCTTGCCTTTCCCAGCAG
3' ss Score
7.79
Exon sequences
Seq C1 exon
CCCACCACTGCAAACAACCAGAGACGCCCACACACGCCAATGTCGGGGCCCTGGACCTGCCATCCATGGGTTACACACTCATCTACTCCTGCCAGGAGGGCTTCTCCCTCCGGGGTGGCTCCGAGCACCGTACCTGCAAAGCCGACGGCAGCTGGACAGGCAAACCGCCCGTCTGCCTGG
Seq A exon
CAG
Seq C2 exon
AGGTCCGGCCCAGCGGGAGACCCATCAACACAGCCCGGGAGCCTATGCTCACCCAAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028804-74-71,74-70-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCACCGTACCTGCAAAG
R:
GCTGTGTTGATGGGTCTCCC
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: