MmuALTA0004955-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000028712 | Cyp4a31
Description
cytochrome P450, family 4, subfamily a, polypeptide 31 [Source:MGI Symbol;Acc:MGI:3028580]
Coordinates
chr4:115236254-115237759:+
Coord C1 exon
chr4:115236254-115236510
Coord A exon
NA
Coord C2 exon
chr4:115237618-115237759
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
TATCTTTCCTTCAACAGCAGTTC
3' ss Score
3.96
Exon sequences
Seq C1 exon
ATCCTTACAGGATTTAGGCAGGAGGCAGAAAGGATTATTGAGAGTGAGGACCTCAACAAAGGTGAACTATGAGTGTCTCTGCTCTAAGCCTGACCCGATTTGCAGGCAGCCTCTCTGGCTTCCTCCAAGTGGCCTCTGTGTTCTGTCTGCTCCTGCTGCTGGTGAAAGCTGTCCAGGTCTACCTGCACAGGAAATGGCTACTCAAGGCTCTCCAGCAGTTCCCATCACCGCCCTTTCACTGGTTCTTTGGGCATGAG
Seq A exon
NA
Seq C2 exon
TTCAAAGGTGACCAAGAACTACAGGAAATTGTGTCATGCATAGAGAACTTCCCAAGTGCCTTTCCTCGATGGTTCTGGGGGAGCAAGGCCTACTTAACTGTCTATGACCCTGACTACATGAAAGTGATTCTGGGGCGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028712-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(11.4=19.0)
A:
NA
C2:
PF0006717=p450=FE(16.2=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCCTTTCACTGGTTCTTT
R:
CCAGAACCATCGAGGAAAGGC
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: