MmuALTA0004959-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000048440 | Cyp4f16
Description
cytochrome P450, family 4, subfamily f, polypeptide 16 [Source:MGI Symbol;Acc:MGI:1917351]
Coordinates
chr17:32673503-32674141:+
Coord C1 exon
chr17:32673503-32673600
Coord A exon
chr17:32673940-32673942
Coord C2 exon
chr17:32673943-32674141
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCG
5' ss Score
9.67
3' ss Seq
TCCTGTGTCTGTCTGCTCAGCAG
3' ss Score
5.73
Exon sequences
Seq C1 exon
GCCTCCCACACAGCTTCCTGAAGTTAGGAAGCAGGGGATAAATGCTTTTCACAGGACTGGGGAGAAGGTCTTAGAGGACCAGCAGCTCCTGAGATAAG
Seq A exon
CAG
Seq C2 exon
GATGCTGCGGCTAAGTGTGTCTGGGCTGGACCTGGGCTCTGTGGTGACCTCGTCATGGCATCTTCTGCTGCTTGGAGTGGCTTCCTGGATTTTGGCCAGAATCCTTGCCTGGACTTACTCATTCTATGAGAACTGCTCCCGCCTCAGTTGTTTCCCTCAGCCTCCTAAAAAAAACTGGTTTTCAGGTCACTTGGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048440-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006717=p450=PU(3.0=21.2)
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTAGAGGACCAGCAGCTCCT
R:
AAGATGCCATGACGAGGTCAC
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: