MmuALTA0005319-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000002668 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr17:57213537-57213777:-
Coord C1 exon
chr17:57213697-57213777
Coord A exon
chr17:57213603-57213619
Coord C2 exon
chr17:57213537-57213602
Length
17 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CAACCTGGGAAACCACACAGTTA
3' ss Score
-1.52
Exon sequences
Seq C1 exon
GTCGCCGAGGCTGAAGAACTCCTACAAAACCTACAGCAACACCCACTTCTTGGACCCCGGTTTTCAGGAAGATCAGAGATG
Seq A exon
TTACTCTCGTCCCACAG
Seq C2 exon
GACAGCAGCATCACTGTCCGGAGTGAATGTGGAATCTTGCCTCCTGCCCTGGGGAATAGCAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002668-7-8,7-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(12.7=100)
A:
NA
C2:
PF0214116=DENN=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAGGCTGAAGAACTCCTA
R:
CCACATTCACTCCGGACAGTG
Band lengths:
110-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: