MmuALTA0005319-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000002668 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr17:57074114-57074354:-
Coord C1 exon
chr17:57074274-57074354
Coord A exon
chr17:57074175-57074196
Coord C2 exon
chr17:57074114-57074174
Length
22 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CAACCTGGGAAACCACACAGTTA
3' ss Score
-1.52
Exon sequences
Seq C1 exon
GTCGCCGAGGCTGAAGAACTCCTACAAAACCTACAGCAACACCCACTTCTTGGACCCCGGTTTTCAGGAAGATCAGAGATG
Seq A exon
TTACTCTCGTCCCACAGGACAG
Seq C2 exon
CAGCATCACTGTCCGGAGTGAATGTGGAATCTTGCCTCCTGCCCTGGGGAATAGCAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002668-9-16,9-15,9-14-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(12.7=100)
A:
NA
C2:
PF0214116=DENN=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAGGCTGAAGAACTCCTA
R:
CCACATTCACTCCGGACAGTG
Band lengths:
105-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types