MmuALTA0005515-2/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000020231 | Dip2a
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:75749107-75750194:-
Coord C1 exon
chr10:75750058-75750194
Coord A exon
chr10:75749188-75749233
Coord C2 exon
chr10:75749107-75749187
Length
46 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
CCGCCCTGTCTTTCTAGTAGTCA
3' ss Score
4.01
Exon sequences
Seq C1 exon
CTAGTGTGTGTGTTGTGAAGGTAGATGGTGCCCCTTATCTCTGTAAAACTGATGAAATTGGAGAAATCTGTGTCAATTCTGTTGCAACTGGGACAGCATACTATGGACTGCTTGGAATCACGAAGAATACATTTGAG
Seq A exon
TCAGTGAGTTGTCTGCTGCCTGACATCCTCTCCCCTGTTCTGGCAG
Seq C2 exon
ACCGTCCCGGTCACTGCGGACGGAGTCCCTGTCTCTGACCGGCCTTTCACCAGGACAGGCCTTCTGGGATTTATCGGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231-19-22,19-21,19-20-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(53.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(5.5=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCAATTCTGTTGCAACTGGG
R:
GAAGGCCTGTCCTGGTGAAAG
Band lengths:
132-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: