MmuALTA0005608-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69306607-69308766:-
Coord C1 exon
chr11:69308574-69308766
Coord A exon
chr11:69306708-69306807
Coord C2 exon
chr11:69306607-69306707
Length
100 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
ACAGATGTGTGGCCTCACAGCTA
3' ss Score
5.34
Exon sequences
Seq C1 exon
AGCGAGACGAGGACATCAGGAAGATCCAGGCCCAGATCAGCAGTGGCATGACTAACAATGCGAGCCTGCTGCAGAATTACCTCAAGACCTGGGACATGTACCGGGAGATCTGGGAGATCAACAAGGACTCCTTCATTCGCCGCTACCAGCGCCTCAACCCCCCTGTCTCCTCTTTTGATGCTGACATTGCCCG
Seq A exon
CTACACGGAGGTGGCGAACAATGTGCAGAAGGAAGAGACGGTCCTCAACATCCAGTTCGTGATGCTGGACTGCTCTCACCTCAAGTTCTCGCTGGTGCAG
Seq C2 exon
CACTGCAACGAGTGGCAGAACAAGTTCACAACCCTGCTCAAGGAGATGGCAGCTGGGCGCCTTGCGGACCTGCACTCCTACCTCAAGGACAATGCTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-25-23,25-22-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATCAGCAGTGGCATGAC
R:
TCCTTGAGGTAGGAGTGCAGG
Band lengths:
251-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: