MmuALTA0006387-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026814 | Eng
Description
endoglin [Source:MGI Symbol;Acc:MGI:95392]
Coordinates
chr2:32646595-32657670:+
Coord C1 exon
chr2:32646595-32647024
Coord A exon
chr2:32657516-32657518
Coord C2 exon
chr2:32657519-32657670
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TTCCCACTATGCTTTCCCAGCAG
3' ss Score
5.73
Exon sequences
Seq C1 exon
CGCATTTCCTGCCTCTCTGGGCCGGGCTGGATGAGCTGAGCTCCCTGCCCTGACAGTCAGACCCCTGCCTTCATCTGTGTCCCGTCCCCAGGCCAGGACCGCCGACAGCTGCTGCCCGAAAGAGCCCAGTGACTCTTTCCCACCACCCAGTCAGCTAGAGACTCCTGCCCTGCTGTGAGTCTCGAGCCCACTTCTCCTGACTTCTCCGCCGCCACCTCAGAAGGCTGGAGCAGGGACGTGGTCGCTCCGGCCGCCTGCTCCCTTCGGATCCCCGCGCGAACCCACGCAGGCCCCGGCGCCCGCCCGCAGCCTTACCTCTGGATACCGGATAAGGCCCAGCGCACAGACTCCCGGGTGGACAGCATGGACCGTGGCGTGCTCCCTCTGCCCATTACCCTGCTGTTTGTCATCTATAGCTTTGTACCCACAA
Seq A exon
CAG
Seq C2 exon
GTCTCGCAGAAAGAGTCGGCTGTGATCTACAGCCTGTGGACCCCACAAGGGGTGAGGTGACGTTTACCACCAGCCAGGTCTCCGAGGGCTGTGTAGCTCAGGCTGCCAATGCTGTGCGTGAAGTCCACGTTCTCTTCCTGGATTTTCCCGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026814-0-3,0-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTCTGCCCATTACCCTG
R:
GGGTCCACAGGCTGTAGATCA
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types