MmuALTA0006636-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000011832 | Evi5l
Description
ecotropic viral integration site 5 like [Source:MGI Symbol;Acc:MGI:2442167]
Coordinates
chr8:4166567-4183670:+
Coord C1 exon
chr8:4166567-4166763
Coord A exon
chr8:4183488-4183491
Coord C2 exon
chr8:4183492-4183670
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
AACGATATGTATCTCCCTAGACA
3' ss Score
7.49
Exon sequences
Seq C1 exon
AGCGGCTCCTGTCAGCGGGTGAAATGGCAGTGGCGGAGCCAGCGACGGCCGCGGTCCCCGGGGGTGGCTGATTGAAAGGGGCCGGGCCGCGGGGTTTGCGGGACCCTCGAGCAGACGTGACCGTGGGTCGGGGCATCGGACGACACAGCGCAGGGACAGCGAGGCTCGGCGCGGCGATGGAGGCGCTCTCGGCGCAG
Seq A exon
ACAG
Seq C2 exon
AGCTGTAACCTGGCATCCCCCTGGCTGATGAGCCTGCCCACCATGGCAAGCCCCACTCTGAGCCCGGACTCCTCATCTCAAGAGGCCCTGTCAGCACCCACCTGCTCCCCAACCTCTGACTCCGAGAATCTCAGCCCAGATGAGCTAGAACTACTGGCCAAGCTCGAGGAGCAGAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011832-1-1,1-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.761
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGGAGGCGCTCTCGG
R:
TCTTGAGATGAGGAGTCCGGG
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: