MmuALTA0006826-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000042788 | Fam166b
Description
family with sequence similarity 166, member B [Source:MGI Symbol;Acc:MGI:2445194]
Coordinates
chr4:43440460-43440711:-
Coord C1 exon
chr4:43440660-43440711
Coord A exon
NA
Coord C2 exon
chr4:43440460-43440514
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCCCTGTGCTTACCAACCAGGCA
3' ss Score
7.25
Exon sequences
Seq C1 exon
GCTTCCCCCTACTCCATGGATGATACAGATCCCCACAAGTTCTTCATGTCAG
Seq A exon
NA
Seq C2 exon
GCATTGCAGGAATTTGGGCAGATGTGCTCACGGGGCCGGGCGCACAAGGACCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042788-5-7,5-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=NA C2=0.460
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PD(9.7=33.3),PF106294=DUF2475=PU(13.1=44.4)
A:
NA
C2:
PF106294=DUF2475=PD(85.2=77.6),PF106294=DUF2475=PU(32.5=19.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCCCCTACTCCATGGAT
R:
CCCCGTGAGCACATCTGC
Band lengths:
87-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: