MmuALTA0007851-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000056300 | Gm13247
Description
predicted gene 13247 [Source:MGI Symbol;Acc:MGI:3700965]
Coordinates
chr4:145665886-145696012:-
Coord C1 exon
chr4:145695895-145696012
Coord A exon
chr4:145665967-145665969
Coord C2 exon
chr4:145665886-145665966
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
TCCTTGATGTGAAATTTAAGAAG
3' ss Score
0.49
Exon sequences
Seq C1 exon
CAGGAAGTCATGGAGGGAGACTAGTGCCTAGTGTTTGCTGAACCTGAAAACTTCCTTAAGGTGCAGTTGCTGTGCTGGCCTCCTAGGATATTCAGCAGCTGGTCCTGTCACCTGCCAG
Seq A exon
AAG
Seq C2 exon
AATTTGAATGTTTGCTCCTCACCAAGAATCTGGGAGAAGAACAACTAAAGAATGAGTGCCTCTCTGGTAAACCCTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056300-4-14,4-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.100
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAGGTGCAGTTGCTGTGCT
R:
CCCAGATTCTTGGTGAGGAGC
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: