MmuALTA0007857-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000051107 | Gm15440
Description
predicted gene 15440 [Source:MGI Symbol;Acc:MGI:3642353]
Coordinates
chr13:51695419-51701041:-
Coord C1 exon
chr13:51700837-51701041
Coord A exon
NA
Coord C2 exon
chr13:51695419-51695447
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTGATTTCTGCACTCAGAAGGAA
3' ss Score
0.58
Exon sequences
Seq C1 exon
GCCTCATCTCCTAAGTCCTTCCCTCCTCCTGGCTCCTCTCTATCCTGTCTGGGCCCTGACTCATCTTCTCCCAGAAGCCCTCGGCCGGCCTTGGCCTCGGGGCCCAACAGCCGTAAGCAGGTCACCTTACTGCCACCCTTCTTGAGTGACCAGGCGCAGAAGGTGCAGGCGCTGGGGACCTTCTACCTCTTCTGCCAGGCCACAG
Seq A exon
NA
Seq C2 exon
GAATTGGATAGTTAAAGAACCAACAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051107-2-2,2-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCACCCTTCTTGAGTGAC
R:
TCTCTGTTGGTTCTTTAACTATCCA
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types