MmuALTA0007857-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000051107 | Gm15440
Description
predicted gene 15440 [Source:MGI Symbol;Acc:MGI:3642353]
Coordinates
chr13:51790788-51796410:-
Coord C1 exon
chr13:51796206-51796410
Coord A exon
chr13:51790817-51790819
Coord C2 exon
chr13:51790788-51790816
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCTTTGATTTCTGCACTCAGAAG
3' ss Score
6.15
Exon sequences
Seq C1 exon
GCCTCATCTCCTAAGTCCTTCCCTCCTCCTGGCTCCTCTCTATCCTGTCTGGGCCCTGACTCATCTTCTCCCAGAAGCCCTCGGCCGGCCTTGGCCTCGGGGCCCAACAGCCGTAAGCAGGTCACCTTACTGCCACCCTTCTTGAGTGACCAGGCGCAGAAGGTGCAGGCGCTGGGGACCTTCTACCTCTTCTGCCAGGCCACAG
Seq A exon
AAG
Seq C2 exon
GAATTGGATAGTTAAAGAACCAACAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051107-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCACCCTTCTTGAGTGAC
R:
TCTCTGTTGGTTCTTTAACTATCCA
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: