MmuALTA0007904-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000073402 | Gm8909
Description
predicted gene 8909 [Source:MGI Symbol;Acc:MGI:3704134]
Coordinates
chr17:36304871-36305468:-
Coord C1 exon
chr17:36305389-36305468
Coord A exon
chr17:36305153-36305236
Coord C2 exon
chr17:36304871-36305152
Length
84 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
CTCCGCTTCTGCCCGCGCAGCCA
3' ss Score
7.05
Exon sequences
Seq C1 exon
ATTCCCAGATGGGGCAATGGCACCGCGAACGCTGCTCCTGCTGCTGGCCGCTGCCCTGATACTGACGGAGACACGCGCGG
Seq A exon
CCACCGAAGGTCCCGGGAGGAGGTCGGGGTCTCACCGCGAGCCGCCCCCAGGCCCACACTCGATGCGGTATTTCACCACCGCAG
Seq C2 exon
TGTCCCGGCCCGGCCCACACTCGATGCGGTATTTCGAGACCGCCGTGTCCCGGCCCGGCCTCGGGGAGCCCTGGTTCATCTCTGTCGGCTACGTGGACGACACGCAGTTCGTGCGCTTCGACGGCGACGCGGAGAATCCGAGGATGGAGCCGCGGGCGCCCTGGATGGAGCAGGAGGGGCCGGAGTATTGGGAGCGGGAGACACAGATCGCCAAGGGCCATGAGCAGGGTTTCCAAGGGAGCCTGAGGAACCTGCTCCACTACTACAACCAGAGCGCGGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073402-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.385
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0012913=MHC_I=PU(50.3=94.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCTGATACTGACGGAGA
R:
GGCTCCATCCTCGGATTCTCC
Band lengths:
181-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: