MmuALTA0008084-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000005823 | Gpr108
Description
G protein-coupled receptor 108 [Source:MGI Symbol;Acc:MGI:1925558]
Coordinates
chr17:57242941-57244368:-
Coord C1 exon
chr17:57244247-57244368
Coord A exon
chr17:57243112-57243134
Coord C2 exon
chr17:57242941-57243111
Length
23 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
GCCCATTTGTCTTTTGACAGTCA
3' ss Score
7.02
Exon sequences
Seq C1 exon
GGTCCAAGTCCGAAAATATGGGGAGCAGAAGTTGTTCATCTCCCCTGGCCTTCTCCCTGAAGCTCCCACCCAGTCAGGTCCCCCGAAACCAGACCCAGCAGGCACCCCCAAGGACAACCACG
Seq A exon
TCATTCACCCATCTCCTACAGAG
Seq C2 exon
ATGTCTGCAGTCAAGGAGAATCAGACAGCGCCCCAGGTTTCAGGGGATAAAACTACCCCAGGGGAACACAGGCACTCATCCGAGAGACAGCCACCCACGCAGGACCCCAGTGGGAAGGAGAAGGATCAGGTGTTGGGACTGGGCCACCTCAATGACTCCTACAACTTCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005823-10-8,10-7,10-6-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.815
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTCCCTGAAGCTCCCACC
R:
GGCGCTGTCTGATTCTCCTTG
Band lengths:
105-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types