MmuALTA0008128-2/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000034786 | Gpsm3
Description
G-protein signalling modulator 3 (AGS3-like, C. elegans) [Source:MGI Symbol;Acc:MGI:2146785]
Coordinates
chr17:34590461-34590941:+
Coord C1 exon
chr17:34590461-34590563
Coord A exon
chr17:34590780-34590801
Coord C2 exon
chr17:34590802-34590941
Length
22 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
GCTCCCTGCTCTCCCTGCAGACT
3' ss Score
11.87
Exon sequences
Seq C1 exon
AGTCTCCCGCAGGATGATCAGGGATGGCCCCCTGTGAATGCCACCGCTCGGCCTTGGAGATCTGCTCCTCCCTCCCCTCCTCCTCCTGGAACCCGACACACAG
Seq A exon
ACTGAGCTCCTTCTGGACCTAG
Seq C2 exon
TGGCCGAAGCCCAGTCCCGCCGCCTAGAGGAACAGAGGGCCACCTTCCACACCCCCGAGGCCCCACCAAACCTAGCCCCAGCCCCACCCCGGCTTCTTGAAGACAAAGAACAGCTCTACAGCACCATCCTTAGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034786-1-7,1-6,1-5,1-4-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.912
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGCCTTGGAGATCTGCTC
R:
AGGTGGCCCTCTGTTCCTCTA
Band lengths:
102-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types