MmuALTA0008360-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000067235 | H2-Q10
Description
histocompatibility 2, Q region locus 10 [Source:MGI Symbol;Acc:MGI:95929]
Coordinates
chr17:35610431-35610745:+
Coord C1 exon
chr17:35610431-35610534
Coord A exon
chr17:35610713-35610716
Coord C2 exon
chr17:35610717-35610745
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CACATCTTTTCCTCTCACAGGTA
3' ss Score
11.35
Exon sequences
Seq C1 exon
AACCTCCTCCTTCCACTGACTCTATCATGTCACACATTGCTGATCTGCTGTGGCCATCATTAAAGCTCTGGTGGTATTTGTGATGAAGAGAAGGAGAAACACAG
Seq A exon
GTAG
Seq C2 exon
AAAAAGAGGGGACTATGCTCCCGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067235-8-7,8-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF066236=MHC_I_C=FE(38.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGCTGATCTGCTGTGGC
R:
CGGGAGCATAGTCCCCTCTTT
Band lengths:
94-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: