MmuALTA0008374-1/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000025075 | Habp2
Description
hyaluronic acid binding protein 2 [Source:MGI Symbol;Acc:MGI:1196378]
Coordinates
chr19:56385592-56386332:+
Coord C1 exon
chr19:56385592-56385711
Coord A exon
NA
Coord C2 exon
chr19:56386268-56386332
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGG
5' ss Score
7.37
3' ss Seq
ACTCCCACCTCCTCTTGCAGGAG
3' ss Score
10.43
Exon sequences
Seq C1 exon
TGCTTCCGGCATGCAGGCCAAACCCCTGCCAGAATGGCGGAGTCTGTTCCCGACACAGACGGAGATCCAGGTTTACCTGTGCCTGTCCAGACCAGTATAAGGGGAAATTCTGTGAAATAG
Seq A exon
NA
Seq C2 exon
GAGACTTATAACATGTTTATGGAGGATGCAGAGACCCACGGGATCGCAGAGCACAACTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025075-6-11,6-10,6-9-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=80.5)
A:
NA
C2:
PF0005113=Kringle=PU(63.9=91.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCAGGCCAAACCCCT
R:
AGAAGTTGTGCTCTGCGATCC
Band lengths:
172-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: