MmuALTA0008383-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000004894 | Hapln2
Description
hyaluronan and proteoglycan link protein 2 [Source:MGI Symbol;Acc:MGI:2137300]
Coordinates
chr3:88023765-88024471:-
Coord C1 exon
chr3:88024330-88024471
Coord A exon
chr3:88024010-88024118
Coord C2 exon
chr3:88023765-88024009
Length
109 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
ACTGTGGCCCCTCTGCTCAGCCC
3' ss Score
5.82
Exon sequences
Seq C1 exon
TACTAGGGAGTGCCCACCACCTGTGCCCTGCAGACGGTGCTTGCTGACACCATCATGCCAAGCAGGATCCCTCTCCCTGCGTTCTGCTGCTTCCTTCTCCCCTGGGCCTTCACCAGCTTTCACAAAGCCCTGGGGAATCCGG
Seq A exon
CCCCCCATCCGGGTCCCCACTACCTCCTGCCCCCCATCCACGAGGTCATTCACTCTCGTCGTGGGGCCACGGCCACACTGCCCTGCGTCCTGGGCACCTCGCCTCCCAG
Seq C2 exon
CTACAAAGTACGCTGGAGCAAAGTGGAGCCCGGTGAGCTGCGGGAAACGCTAATCCTCATTACCAACGGACTGCACGCCCGGGACTACGGGCTCCTGGGAGGGCGCGCCAGCTTGCGGAGAGGGCATCGGCTGGACGCCTCCCTGATCATCAAGAACGTGCGTCTGGAGGATGAGGGTCGGTACCGCTGCGAGCTCATCAATGGCATTGAGGACGAGAGCGTGGCACTGACCCTGCGCCTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004894-3-5,3-4,3-3-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGACACCATCATGCCAA
R:
TCTTGATGATCAGGGAGGCGT
Band lengths:
257-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types