MmuALTA0008684-3/6 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000004980 | Hnrnpa2b1
Description
heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
Coordinates
chr6:51464497-51465241:-
Coord C1 exon
chr6:51465179-51465241
Coord A exon
chr6:51464506-51464514
Coord C2 exon
chr6:51464497-51464505
Length
9 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
3' ss Seq
AGGTAGCCCTGGTTATGGAGGAG
3' ss Score
-11.65
Exon sequences
Seq C1 exon
ATGGATACGGAAGTGGACGTGGATTTGGGGATGGCTATAATGGGTATGGAGGAGGACCTGGAG
Seq A exon
GAGGAAGAG
Seq C2 exon
GAGGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004980-24-28,24-27,24-26,24-25,24-24,24-23-3/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=NA C2=0.787
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types