MmuALTA0009119-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000032178 | Ilf3
Description
interleukin enhancer binding factor 3 [Source:MGI Symbol;Acc:MGI:1339973]
Coordinates
chr9:21397969-21399237:+
Coord C1 exon
chr9:21397969-21398136
Coord A exon
chr9:21399113-21399127
Coord C2 exon
chr9:21399128-21399237
Length
15 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TTGTTTGTGCTTTCCCTGAGGGC
3' ss Score
-4.13
Exon sequences
Seq C1 exon
GTGTTACAGGACATGGGCTTGCCAACAGGCGCTGAAGGCAGAGACTCCAGCAAGGGGGAAGACTCCGCTGAGGAGTCAGATGGGAAGCCAGCAATAGTGGCCCCACCCCCTGTGGTGGAAGCTGTCTCCAACCCCAGTTCTGTCTTCCCTTCAGATGCCACTACTGAG
Seq A exon
GGCGTCAAATAGCAG
Seq C2 exon
GGACCGATTTTGACTAAGCATGGCAAGAACCCTGTTATGGAGCTTAATGAGAAGAGACGTGGCCTCAAATATGAGCTCATTTCTGAGACGGGGGGCAGCCACGACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032178-34-36,34-35,34-34-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=NA C2=0.906
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PD(6.2=7.1)
A:
NA
C2:
PF0003520=dsrm=PU(50.8=76.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCCAACCCCAGTTCTGT
R:
TTGAGGCCACGTCTCTTCTCA
Band lengths:
114-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types