MmuALTA0009393-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000020758 | Itgb4
Description
integrin beta 4 [Source:MGI Symbol;Acc:MGI:96613]
Coordinates
chr11:115988890-115989841:+
Coord C1 exon
chr11:115988890-115989019
Coord A exon
NA
Coord C2 exon
chr11:115989722-115989841
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
ACAGTCTGTGGATTTAGCAGAAG
3' ss Score
1.61
Exon sequences
Seq C1 exon
ATACGCCTGGGTCTCTGTGAGGATCTCCGCTCCTGCGTACAGTGCCAGGCCTGGGGCACCGGGGAGAAGAAAGGGCGCGCGTGTGACGATTGCCCCTTTAAAGTCAAGATGGTAGACGAGCTTAAGAAAG
Seq A exon
NA
Seq C2 exon
AAGAGGTGGTGGAGTACTGCTCCTTCCGGGATGAGGATGACGACTGCACTTACAGCTACAACGTGGAGGGCGATGGCAGCCCTGGGCCCAACAGCACAGTCCTGGTCCACAAAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020758-20-29,20-28-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079657=Integrin_B_tail=PU(44.2=86.4)
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGACGATTGCCCCTTTA
R:
GTGCAGTCGTCATCCTCATCC
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types