MmuALTA0009521-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000038319 | Kcnh2
Description
potassium voltage-gated channel, subfamily H (eag-related), member 2 [Source:MGI Symbol;Acc:MGI:1341722]
Coordinates
chr5:23830774-23831699:-
Coord C1 exon
chr5:23831312-23831699
Coord A exon
chr5:23830974-23831091
Coord C2 exon
chr5:23830774-23830973
Length
118 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
ATGTGTATGTCCACTCTCAGACT
3' ss Score
6.56
Exon sequences
Seq C1 exon
CTGATCGGGCTGCTGAAAACTGCGAGGCTGCTGCGGCTGGTGCGCGTGGCTCGGAAGCTGGACCGCTACTCGGAGTACGGGGCAGCAGTGCTCTTCCTGCTCATGTGCACCTTCGCCCTCATTGCGCACTGGTTGGCCTGCATCTGGTACGCGATCGGCAACATGGAACAGCCTCACATGGACTCACACATCGGCTGGCTGCACAACTTGGGCGACCAGATCGGCAAGCCCTACAACAGCAGCGGCCTGGGAGGCCCCTCCATCAAGGACAAGTATGTCACAGCGCTCTACTTCACCTTCAGCAGCCTCACCAGCGTGGGCTTTGGCAATGTCTCTCCCAACACCAACTCAGAGAAGATCTTCTCCATCTGTGTCATGCTCATTGGCT
Seq A exon
ACTGAGTCGTGACCGGACCGCGAGTGTCGTTGACCTGGTGCGGGGCCTGAGCAGAGGGTCCCCGTGGGCGGGCGGGGTCCCTGCGGATGCTGACGGCCCCACTCACCCACGCCCCCAG
Seq C2 exon
CCCTCATGTATGCCAGCATCTTCGGCAACGTGTCCGCCATCATCCAGCGGCTGTACTCGGGCACGGCCCGCTACCACACACAGATGCTCCGGGTGCGGGAGTTTATCCGCTTTCACCAGATTCCCAACCCATTACGCCAGCGCCTCGAGGAGTACTTCCAGCATGCTTGGTCCTACACCAATGGCATCGACATGAACGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038319-9-11,9-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(62.6=100)
A:
NA
C2:
PF0052026=Ion_trans=PD(4.9=14.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGGCAATGTCTCTCCCA
R:
CGATGCCATTGGTGTAGGACC
Band lengths:
258-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: