MmuALTA0009521-4/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000038319 | Kcnh2
Description
potassium voltage-gated channel, subfamily H (eag-related), member 2 [Source:MGI Symbol;Acc:MGI:1341722]
Coordinates
chr5:24324956-24325881:-
Coord C1 exon
chr5:24325494-24325881
Coord A exon
chr5:24325073-24325273
Coord C2 exon
chr5:24324956-24325072
Length
201 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
ATGTGTATGTCCACTCTCAGACT
3' ss Score
6.56
Exon sequences
Seq C1 exon
CTGATCGGGCTGCTGAAAACTGCGAGGCTGCTGCGGCTGGTGCGCGTGGCTCGGAAGCTGGACCGCTACTCGGAGTACGGGGCAGCAGTGCTCTTCCTGCTCATGTGCACCTTCGCCCTCATTGCGCACTGGTTGGCCTGCATCTGGTACGCGATCGGCAACATGGAACAGCCTCACATGGACTCACACATCGGCTGGCTGCACAACTTGGGCGACCAGATCGGCAAGCCCTACAACAGCAGCGGCCTGGGAGGCCCCTCCATCAAGGACAAGTATGTCACAGCGCTCTACTTCACCTTCAGCAGCCTCACCAGCGTGGGCTTTGGCAATGTCTCTCCCAACACCAACTCAGAGAAGATCTTCTCCATCTGTGTCATGCTCATTGGCT
Seq A exon
ACTGAGTCGTGACCGGACCGCGAGTGTCGTTGACCTGGTGCGGGGCCTGAGCAGAGGGTCCCCGTGGGCGGGCGGGGTCCCTGCGGATGCTGACGGCCCCACTCACCCACGCCCCCAGCCCTCATGTATGCCAGCATCTTCGGCAACGTGTCCGCCATCATCCAGCGGCTGTACTCGGGCACGGCCCGCTACCACACACAG
Seq C2 exon
ATGCTCCGGGTGCGGGAGTTTATCCGCTTTCACCAGATTCCCAACCCATTACGCCAGCGCCTCGAGGAGTACTTCCAGCATGCTTGGTCCTACACCAATGGCATCGACATGAACGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038319-34-20,34-19,34-18,34-17-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(62.6=100)
A:
NA
C2:
PF0052026=Ion_trans=PD(4.9=14.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTCACATGGACTCACAC
R:
TGCTGGAAGTACTCCTCGAGG
Band lengths:
300-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types