MmuALTA0009522-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000037579 | Kcnh3
Description
potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:MGI Symbol;Acc:MGI:1341723]
Coordinates
chr15:99226981-99228042:+
Coord C1 exon
chr15:99226981-99227115
Coord A exon
NA
Coord C2 exon
chr15:99227909-99228042
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
AGAACCCTCTTTTCTTGTAGGCG
3' ss Score
7.86
Exon sequences
Seq C1 exon
GGCTTCCATTCTGGTGTCTCCTGGATGTGATACCTATAAAAAATGAGAAGGGGGAGGTGGCCCTCTTCCTGGTCTCTCACAAGGACATCAGCGAGACCAAGAACCGAGGAGGCCCTGACAACTGGAAGGAGAGAG
Seq A exon
NA
Seq C2 exon
GCGGTGGCCGGCGCCGATATGGTCGGGCCGGATCCAAAGGCTTCAATGCCAATCGGAGGCGGAGCCGGGCAGTTCTCTACCACCTCTCTGGCCATCTGCAGAAGCAACCCAAGGGCAAGCACAAGCTCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037579-9-5,9-4,9-3-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(29.0=67.4)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAGGACATCAGCGAGACC
R:
ATTGAAGCCTTTGGATCCGGC
Band lengths:
105-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types