MmuALTA0009548-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29489033-29490148:-
Coord C1 exon
chr6:29490066-29490148
Coord A exon
chr6:29489151-29489153
Coord C2 exon
chr6:29489033-29489150
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TCTGTCCATTCTTGTTGCAGCAG
3' ss Score
9.44
Exon sequences
Seq C1 exon
GCTGTGAGCATGGGGGCAGGAAGTATGAGCCTGGGGAGAGCTTCCAGCCTGGGGCAGACCCGTGTGAAGTGTGCATCTGCAAG
Seq A exon
CAG
Seq C2 exon
AAGCGTGAGGGGCCTCCCAGCCTTCACTGTAGTCGGCGGCAGTGCCCCAGCCTGGTGGGCTGCCCACCAAGCCAGCTTCTTCCTCCTGGCCCCCAGCACTGCTGTCCCACCTGTGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022-39-57,39-56,39-55-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(39.4=92.9)
A:
NA
C2:
PF0009313=VWC=PD(56.9=92.5)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAGTATGAGCCTGGGGA
R:
ACTACAGTGAAGGCTGGGAGG
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types