MmuALTA0009550-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29501202-29502383:-
Coord C1 exon
chr6:29502290-29502383
Coord A exon
chr6:29501285-29501309
Coord C2 exon
chr6:29501202-29501284
Length
25 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCCAAGATAATTCCCACTAGGCC
3' ss Score
2.72
Exon sequences
Seq C1 exon
AGGAGCCTGGTTCGATGTGTGCCTGTGAAGTGCCAGCCAAGCCCCTGCCTCAATCCAGTCCCGAGGCTTGGACACTGCTGCCCAGTCTGCCAAG
Seq A exon
GCCTGTTCTCTGTCCCCAGCCTCAG
Seq C2 exon
GCTGCACAGAAGGGAACTCTCATAGGGACCATGGCCAAGAGTGGACCACTCCTGGAGACCCCTGCCGCATCTGCCAGTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022-8-19,8-18,8-17-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(50.9=90.6)
A:
NA
C2:
PF0009313=VWC=PU(45.6=86.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATGTGTGCCTGTGAAGTG
R:
TGGCCATGGTCCCTATGAGAG
Band lengths:
120-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types