MmuALTA0009633-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000036333 | Kidins220
Description
kinase D-interacting substrate 220 [Source:MGI Symbol;Acc:MGI:1924730]
Coordinates
chr12:24989738-24990774:+
Coord C1 exon
chr12:24989738-24989836
Coord A exon
NA
Coord C2 exon
chr12:24990676-24990774
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
GTGTCTGTGTATCCCAGCAGTAC
3' ss Score
5.19
Exon sequences
Seq C1 exon
GGGGGATGGACAGCTCTCATGTGGGCGTGCTACAAAGGCAGGACGGATGTTGTGGAGTTGCTTCTTTCTCATGGTGCCAACCCAAGTGTCACTGGTTTG
Seq A exon
NA
Seq C2 exon
TACAGTGTCTACCCAATCATCTGGGCAGCGGGCAGAGGCCACGCCGACATAGTGCATCTTCTGCTGCAGAATGGTGCGAAAGTCAATTGCTCTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036333-22-11,22-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=97.0)
A:
NA
C2:
PF127962=Ank_2=PU(29.0=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACCCAAGTGTCACTGGTT
R:
TGACTTTCGCACCATTCTGCA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types