MmuALTA0009770-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000030325 | Klrb1c
Description
killer cell lectin-like receptor subfamily B member 1C [Source:MGI Symbol;Acc:MGI:107538]
Coordinates
chr6:128734123-128734829:-
Coord C1 exon
chr6:128734755-128734829
Coord A exon
chr6:128734269-128734277
Coord C2 exon
chr6:128734123-128734268
Length
9 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
ATGTCTTCCTCTCACTTCAGATT
3' ss Score
10.73
Exon sequences
Seq C1 exon
TGCGAGTCTTAGTACAAAAACCATCAAGAGAAAAATGCTGTGTGTTTATTCAAGAGAACCTGAATAAAACAACAG
Seq A exon
ATTGTTCAG
Seq C2 exon
TTAATTTAGAGTGCCCACAAGACTGGCTTTTACACCGAGATAAGTGCTTTCACGTTTCTCAAGTTTCCAACACTTGGGAGGAAGGTCAAGCTGACTGTGGTAGAAAAGGAGCCACTTTGCTGCTCATTCAAGACCAAGAAGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030325-2-3,2-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005916=Lectin_C=PU(26.5=55.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAGTCTTAGTACAAAAACCA
R:
AAAAGCCAGTCTTGTGGGCAC
Band lengths:
106-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: