MmuALTA0009952-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026943 | Lcn12
Description
lipocalin 12 [Source:MGI Symbol;Acc:MGI:1924951]
Coordinates
chr2:25492241-25492507:-
Coord C1 exon
chr2:25492431-25492507
Coord A exon
chr2:25492282-25492357
Coord C2 exon
chr2:25492241-25492281
Length
76 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TGTGTGTCCCTCAGGGTCAGGGC
3' ss Score
0.81
Exon sequences
Seq C1 exon
GGGCAAGCACTGCAACACTTGGTCCTATACCCTGATCCCAGCAACCAAGCCTGGGCAATTCACCAGGGACAACAGAG
Seq A exon
GGCCTGGGGCAGACAGAGAGAATATACAGGTCATAGAGACAGACTACATCACGTTTGCCCTGGTGCTGTCCCTCAG
Seq C2 exon
ACAGACAAGCAGCCAGAACATCACAAGGGTCAGCCTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026943-6-9,6-8,6-7-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(17.8=100)
A:
NA
C2:
PF0006118=Lipocalin=FE(28.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGCAACACTTGGTCCTA
R:
TGACCCTTGTGATGTTCTGGC
Band lengths:
103-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types