Special

MmuALTA0010333-2/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000024940 | Ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:MGI Symbol;Acc:MGI:1101355]
Coordinates
chr19:5745440-5746120:+
Coord C1 exon
chr19:5745440-5745769
Coord A exon
chr19:5745918-5745968
Coord C2 exon
chr19:5745969-5746120
Length
51 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
CACCGCGCCCCGCCCCCCAGTGC
3' ss Score
7.08
Exon sequences
Seq C1 exon
TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG
Seq A exon
TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAG
Seq C2 exon
CTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024940-2-3,2-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.631 A=NA C2=0.882
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0000822=EGF=WD(100=24.3)

							
A:
NA

							
C2:
PF0068312=TB=PU(2.3=1.5)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000075703





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000080214
          









    
Other Skipping Isoforms:
NA
  



Associated events






Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr11:65321375-65321376 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr29:44396722-44396924 
ALTERNATIVE
BtaALTA0017025-3/3
(LTBP3)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr5:36954939-36954940 
HIGH PSI
DreALTA0016104-2/2
(ltbp3)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCAGGACAAATCTCGGCAGAA

				
R: 
CAGTGGCTTTTGGGTGGGTG

				
Band lengths: 
138-189

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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