Special

MmuALTA0010570-1/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000026977 | March7
Description
membrane-associated ring finger (C3HC4) 7 [Source:MGI Symbol;Acc:MGI:1931053]
Coordinates
chr2:60070257-60072450:+
Coord C1 exon
chr2:60070257-60070424
Coord A exon
NA
Coord C2 exon
chr2:60071991-60072450
Length
0 bp
Sequences
Splice sites
5' ss Seq
CATGTATGT
5' ss Score
5.71
3' ss Seq
TTCCTTCTTCATATTCACAGGGA
3' ss Score
8.18
Exon sequences
Seq C1 exon
ATTCTTCTTGGAGGCATAGTCAAGTTCCCAGATCTTCATCAATGGTACTTGGTTCATTTGGAACAGACTTGATGAGAGAAAGGAGAGATTTGGACAGGAGAAGAGAGTCCTCCATCAGCAATCTTATGGATTATAATCACCGAAGTGGTGATTTCACAACTTCATCAT
Seq A exon
NA
Seq C2 exon
GGAGCAAGACCAAAAGAGAATGCAGTGAGCACTTTACAGTTGAATTCATCATCCACCAATCACCAATTGCCTTCTGACCATCAGACAGTACCAAGTTCTAGGGACTCCAGTAGAAGTTCTTTCAGATCACATTTTTCTCCAAGACAATCAGAATCTTTTCGCAACAGTTCACATCCTGCATTTTCATATTTTTCAAGTAGAAATGAAACTCCAACTATAAGCAATTCAGAAAGGGGTTCATCTCAGAGACCATATCGAGAATCTTCTGACAATGAAGGTAGGCGTACAACTAGGAGATTGCTGTCACGGATAGCTTCTAGCATGTCATCTACTTTTTTCTCACGAAGATCTAGTCAAGATTCCTTGAATACAAGATCTTTGAGTTCTGAAAATTATATTTCTCCGAGAACCCTGACTTCACAGTCTCGGAATAATGGAACCTCCTCGTCCTCTGACGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026977-4-9,4-8-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption when splice site is used (sequence exclusion)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.965 A=NA C2=0.812
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000068961





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000099808, ENSMUSP00000099809
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr2:160604346-160604347 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr2:36701465-36701466 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr7:38338576-38338577 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGACAGGAGAAGAGAGTCCTCC

				
R: 
TCAACTGTAAAGTGCTCACTGC

				
Band lengths: 
120-155

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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