Special

MmuALTA0010629-1/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000025409 | Mbd6
Description
methyl-CpG binding domain protein 6 [Source:MGI Symbol;Acc:MGI:106378]
Coordinates
chr10:126720582-126721268:-
Coord C1 exon
chr10:126721099-126721268
Coord A exon
NA
Coord C2 exon
chr10:126720582-126720995
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
AGAGATGTTTTTGCCAGCAGATC
3' ss Score
3.69
Exon sequences
Seq C1 exon
GTGATCTGTCTTCACTGGCCAGCAGCCCTGGAGCCCTCCCCAGCCTGTTGCAGCCTCCTGGCCCTCTTCTTTCCAGCCAGTTAGGGCTGCAGCTCCTCCCTGGGGGGGGAGCGCCTCCCGCCCTGTCAGAGGCTTCTAGTCCCCTAGCCTGCCTGCTACAGAGTCTCCAG
Seq A exon
NA
Seq C2 exon
ATCCCTCCAGAGCAGCCAGACGCCCCCTGTCTGCCCCCCGAGAGCCCCGCCTCAGCCCTCGAACCGGAGCCTGCCCGGCCTCCCCTCAGTGCCTTAGCCCCACCCCATGCTTCTCCTGACCCCCCAGTCCCCGAGCTGCTCACTGGGAGGGGGTCAGGGAAACGGGGCCGGAGGGGAGGAGGGGGACTTAGGGGCATTAACGGTGAGACCAGGCCAGGCAGAGGCCGAAAGCCGGGCAGCCGCCGAGAGCCTGGCCGGCTAGCACTCAAGTGGGGGACACGTGGTGGCTTCAATGGACAAATGGAACGGTCCCCAAGAAGGACTCACCATTGGCAGCATAATGGGGAGCTAGCGGAAGGGGGTGCTGAGCCCAAGGATCCACCCCTTCCTGGGACCCATTCTGAGGACCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025409-11-15,11-14-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.885 A=NA C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000112805





     
                   









    
Main Skipping Isoform:
ENSMUSP00000026476





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000134527
          









    
Other Skipping Isoforms:
ENSMUSP00000115238, ENSMUSP00000122504
  



Associated events







Conservation


Human
(hg38)
chr12:57528145-57528146 
ALTERNATIVE
HsaALTA0005038-1/2
(MBD6)
Human
(hg19)
chr12:57921930-57922238 
ALTERNATIVE
HsaALTA0005038-1/2
(MBD6)
Rat
(rn6)
chr7:70573049-70573462 
ALTERNATIVE
RnoALTA0023428-1/2
(Mbd6)
Cow
(bosTau6)
chr5:56277988-56277989 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TAGCCTGCCTGCTACAGAGTC

				
R: 
TCCGGTTCGAGGGCTGAG

				
Band lengths: 
94-97

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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