Special

MmuALTA0010630-2/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000025409 | Mbd6
Description
methyl-CpG binding domain protein 6 [Source:MGI Symbol;Acc:MGI:106378]
Coordinates
chr10:126720081-126720500:-
Coord C1 exon
chr10:126720448-126720500
Coord A exon
chr10:126720145-126720218
Coord C2 exon
chr10:126720081-126720144
Length
74 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CCTTTACTATCCAAATGTAGAAG
3' ss Score
5.65
Exon sequences
Seq C1 exon
GTGCCCCCGGGGATAGTCAGAAAGTCTCGTCGTGGCCGGAGGAGAAAATACAA
Seq A exon
AAGTCTCTCACCAGCCTTCTGAAATTCACCTGGTGCTCGGGAGCTGCTCCTGATCATCTGTGCCCTTATTGCAG
Seq C2 exon
CCCTGCCCGGAACAGCAGCAGCTCCCGCCAGGACGTGACCTTGGAACCCAGCCCTACAACGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025409-13-19,13-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption when splice site is used (sequence inclusion)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=1.000 A=NA C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000115238





     
                   









    
Main Skipping Isoform:
ENSMUSP00000026476





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000112805, ENSMUSP00000122504, ENSMUSP00000133835
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr12:57922650-57922651 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr5:56277293-56277294 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCCCGGGGATAGTCAGAAAGT

				
R: 
GCGTTGTAGGGCTGGGTTC

				
Band lengths: 
111-185

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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