MmuALTA0010863-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000040113 | Mettl11b
Description
methyltransferase like 11B [Source:MGI Symbol;Acc:MGI:2685053]
Coordinates
chr1:163704003-163717258:-
Coord C1 exon
chr1:163717083-163717258
Coord A exon
chr1:163704161-163704252
Coord C2 exon
chr1:163704003-163704160
Length
92 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CACAAGGTATTTTTCTGCAGGGG
3' ss Score
5.33
Exon sequences
Seq C1 exon
TAAAATTGTATGCTTTAACAAGCCAAGTCATTGATGGTGAGATGCAGTTCTATGCCAGAGCCAAACTTTTCTACCAAGAAGTACCAGCCACAGAAGAAGGCATGATGGGAAATTTTATTGAATTATCCAACCCAGATATCCAAGCCTCTCGTGAATTTCTTAGGAAATTTGTTGGG
Seq A exon
GGGCCAGGGAGAGCGGGAACTGGCTGCGCCTTGGACTGCGGTTCTGGAATAGGAAGGGTCAGCAAGCACGTCTTGTTGCCTGTTTTCAGCAG
Seq C2 exon
TGTTGAATTGGTGGACATGATGGAATCCTTCCTCCTTGAAGCCCAGAGCTACTTGCAGGTTAACGAGGACAAAGTTGAAAGTTACCACTGCTACAGCCTGCAGGAGTTCACGCCCCACTTAGGGAGATATGATGTCATCTGGATTCAGTGGGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040113-2-5,2-4,2-3-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=PU(21.4=78.0)
A:
NA
C2:
PF058917=Methyltransf_PK=FE(38.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTCTATGCCAGAGCCAA
R:
TGGGCTTCAAGGAGGAAGGAT
Band lengths:
178-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types