MmuALTA0010929-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000008540 | Mgst1
Description
microsomal glutathione S-transferase 1 [Source:MGI Symbol;Acc:MGI:1913850]
Coordinates
chr6:138140316-138147815:+
Coord C1 exon
chr6:138140316-138140606
Coord A exon
chr6:138147659-138147668
Coord C2 exon
chr6:138147669-138147815
Length
10 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTCCCTCTTCTTGTCTACAGTCA
3' ss Score
8.78
Exon sequences
Seq C1 exon
AGCGACATAAAAGTTAGCAACCCCTTCCTTGCTTCCCTTCTTCCGGAGCCGGAACAGAACTGCCAAGATCCTTAGCAGAGAAAGACCCTCACCAGCCACAGCAGTTTCGGGGCGATTCAGGGGTGGGATTTGGCAAGCTCCGAAGGCGGGGCTTGGCACGGTCAGGAGGCGGGGTGATTAATAGAAAAATAGCCTGAAAAAGGGCGGTGCCAGCGCGGGTCCTGTTGGTGAAAAGTCCCAGAAGTGCACAGGCTCGGCAGGACAACTTGCAGCCCTTCTCCCTGGATTCAG
Seq A exon
TCATTTGAAG
Seq C2 exon
ACTGAGACCAAGATTGGAAGCATGGCCGACCTCAGGCAGCTCATGGACAATGAGGTGTTGATGGCCTTTACCTCCTATGCAACGATCATTCTTACCAAGATGATGTTCATGAGCTCTGCGACCGCATTCCAGAGGATAACCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008540-0-6,0-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.023
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0112413=MAPEG=PU(19.3=61.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTCCTGTTGGTGAAAAGT
R:
TCGGCCATGCTTCCAATCTTG
Band lengths:
105-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types