MmuALTA0010975-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000054005 | Mill1
Description
MHC I like leukocyte 1 [Source:MGI Symbol;Acc:MGI:2179988]
Coordinates
chr7:18847788-18848552:+
Coord C1 exon
chr7:18847788-18848051
Coord A exon
chr7:18848277-18848293
Coord C2 exon
chr7:18848294-18848552
Length
17 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TCATTGCCTGGGTGGGACAGATC
3' ss Score
3.13
Exon sequences
Seq C1 exon
AACCCCACACTCTGCGCTATGACCTCATGGCCTTGTCTCTGGAGGTGCCTGGGTTGCCCCAGTTCCTGACCCTGAGATACTTCGATGATGAGCCCTTCCTGCCCTATAAGAAAAACAGCAGCATAACAGACTCCCAGGAACCCAGGATCAAAGACCATCTGAGAGCTGAGACCTGGGGAAGAGAGACTGACGATCTTCAGGAAGAAGAGGAGCAACTCAAAGGGATGCTAGCTGAGATCACAGCCCAGAACGGCCAGAATACGG
Seq A exon
ATCTTCACATCCTCCAG
Seq C2 exon
GCAACCTTCGGCTGTGAGCTTCAAAGAAATGGAAGCACTAGAGGCTTCTGGAAACTGGGCTATGATGGGCAGAACTTCCTCACCTTTGACCAGAAGACTCTCACATGGACAGTGGATGGACCTTCCACCCAGAAGAACAAGACATTCTGGAAGACACGTGCACCCAGAGCTGATCTAGTTAAGACATTCTTGGATGACATATGTCCTGCTCAGCTCCAGAGATACCTTGCTTCCTTGAGAAATGGTCTGCTGAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054005-2-3,2-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.348 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(49.7=98.9)
A:
NA
C2:
PF0012913=MHC_I=PD(49.7=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGATCACAGCCCAGAACG
R:
GCCCATCATAGCCCAGTTTCC
Band lengths:
103-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: