MmuALTA0011080-2/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026766 | Mmadhc
Description
methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria [Source:MGI Symbol;Acc:MGI:1923786]
Coordinates
chr2:50292809-50296309:-
Coord C1 exon
chr2:50296252-50296309
Coord A exon
chr2:50292860-50292898
Coord C2 exon
chr2:50292809-50292859
Length
39 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
CCCAGGATTTTGTTCTTTAGTGA
3' ss Score
4.31
Exon sequences
Seq C1 exon
GGATACTTTGCAGTGGGGCAAGAATTTGCGTCCGCCTTCTTCACTAGAAATGGCCCAT
Seq A exon
TGAAAAGAGTCATCAATCCAAGAGCCTTTTCAACTGCAG
Seq C2 exon
GATCTTCAGGTTCTGATGAGTCTCATGTGGCCACCGCACCTCCAGATATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026766-3-7,3-6,3-5,3-4-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.347
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF102294=DUF2246=PU(11.6=65.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATACTTTGCAGTGGGGCA
R:
TATATCTGGAGGTGCGGTGGC
Band lengths:
108-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types