MmuALTA0011219-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000020695 | Mrc2
Description
mannose receptor, C type 2 [Source:MGI Symbol;Acc:MGI:107818]
Coordinates
chr11:105210882-105211116:+
Coord C1 exon
chr11:105210882-105210908
Coord A exon
NA
Coord C2 exon
chr11:105211016-105211116
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCCCACCTCCATCTCAGCAGCCC
3' ss Score
4.6
Exon sequences
Seq C1 exon
TGGAAGAGAACAGCTTCTTGCCATCAG
Seq A exon
NA
Seq C2 exon
CCCTCCCCGAGAGCCCGGTTGCCCTGGTGGTGGTGCTGACAGCGGTGCTGCTCCTCCTGGCCTTGATGACGGCAGCCCTCATCCTCTACCGGCGCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020695-32-33,32-32-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.347
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAGAACAGCTTCTTGCCA
R:
CGTCATCAAGGCCAGGAGGAG
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: