MmuALTA0011219-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000020695 | Mrc2
Description
mannose receptor, C type 2 [Source:MGI Symbol;Acc:MGI:107818]
Coordinates
chr11:105349568-105349802:+
Coord C1 exon
chr11:105349568-105349594
Coord A exon
chr11:105349699-105349701
Coord C2 exon
chr11:105349702-105349802
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACTCCCCACCTCCATCTCAGCAG
3' ss Score
4.76
Exon sequences
Seq C1 exon
TGGAAGAGAACAGCTTCTTGCCATCAG
Seq A exon
CAG
Seq C2 exon
CCCTCCCCGAGAGCCCGGTTGCCCTGGTGGTGGTGCTGACAGCGGTGCTGCTCCTCCTGGCCTTGATGACGGCAGCCCTCATCCTCTACCGGCGCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020695-42-58,42-57-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.347
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAGAACAGCTTCTTGCCA
R:
CGTCATCAAGGCCAGGAGGAG
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types