MmuALTA0011444-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000028991 | Mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:MGI Symbol;Acc:MGI:1928394]
Coordinates
chr4:147930376-147931437:+
Coord C1 exon
chr4:147930376-147930481
Coord A exon
NA
Coord C2 exon
chr4:147931337-147931437
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CAGTTGGTCCTCTCAACCAGGGG
3' ss Score
5.61
Exon sequences
Seq C1 exon
GTCGGGATTTCTCTCATGATGACACTTTGGATGTTCCAACCCAAGTGGAGCTGCTTATCAAGCAGGCAACATCTCACGAGAACCTCTGCCAGTGCTACATTGGCTG
Seq A exon
NA
Seq C2 exon
GGGCTCCAACGGCAAGGACACAGAGGTCGGCACTCCACTATCCTGTTACCTCACCCGTCCCTGGATGCAGTGGCGACATTTGCAGGATGGGCCAACATGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028991-67-70,67-69-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0226015=FATC=PU(84.8=77.8)
A:
NA
C2:
PF0226015=FATC=PD(12.1=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGGATTTCTCTCATGATGACA
R:
CCATGTTGGCCCATCCTGC
Band lengths:
206-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: