MmuALTA0011533-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000020900 | Myh10
Description
myosin, heavy polypeptide 10, non-muscle [Source:MGI Symbol;Acc:MGI:1930780]
Coordinates
chr11:68627884-68628529:+
Coord C1 exon
chr11:68627884-68628056
Coord A exon
chr11:68628292-68628428
Coord C2 exon
chr11:68628429-68628529
Length
137 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTGGCCCTGCTCACGTGCAGGGG
3' ss Score
6.31
Exon sequences
Seq C1 exon
ATGGAGAAGGCTAATGCCAGGATGAAGCAGCTTAAACGACAGTTGGAAGAGGCTGAGGAAGAGGCCACACGTGCCAACGCATCTCGGCGTAAACTCCAAAGGGAGCTGGACGACGCCACTGAGGCCAATGAAGGCCTGAGCCGCGAGGTCAGCACTCTCAAGAACCGGCTCAG
Seq A exon
GGGGGGGGGGGCGGCACAGGATGATGGGGTAGGAAAGCTACCCCCCAAGGCCGTGACGCCCCAGACGGGGTAGAAGGTGGAGAGTGAGCCTTGTTTAGAACCCAGCAGCCTCATGTTCCTGTGCATTTCTCTCCCAG
Seq C2 exon
GCGGGGCGGTCCAATCAGCTTTTCTTCAAGCCGATCTGGCCGGCGCCAGCTGCACATTGAGGGGGCATCGCTAGAGCTGTCAGATGACGACACAGAAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020900-55-58,55-57-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.1=2.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCAGGATGAAGCAGCTT
R:
CGTCATCTGACAGCTCTAGCG
Band lengths:
250-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: