MmuALTA0011537-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:55584604-55585444:-
Coord C1 exon
chr14:55585391-55585444
Coord A exon
NA
Coord C2 exon
chr14:55584604-55584672
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTGTTCCTCTCTCCGTCCAGCTG
3' ss Score
10.44
Exon sequences
Seq C1 exon
ATATAAAGGGGCTGGAGCACTGAGAGCTGTCAGACAGAGATTTCTCCAACCCAG
Seq A exon
NA
Seq C2 exon
CTGCGCCACTGTGGTGCCTCGTTCCAGCTGTGGTCCACATTCTTCAGGATTCTCTGAAAAGTTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-1-5,1-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAAGGGGCTGGAGCACTGA
R:
TGGTTAACTTTTCAGAGAATCCTGA
Band lengths:
120-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: