MmuALTA0011546-2/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25654951-25656278:+
Coord C1 exon
chr15:25654951-25655035
Coord A exon
chr15:25656178-25656198
Coord C2 exon
chr15:25656199-25656278
Length
21 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TCTTTGTCTTTCTGTAGAAGAAT
3' ss Score
2.52
Exon sequences
Seq C1 exon
AACCGAGTAGTGAGGCAGAATCCCGGGGAGAGGAATTATCACATATTCTATGCACTGCTGGCAGGGCTGGACCAGGGAGAGCGAG
Seq A exon
AATTTTATTTATCTTTGCCAG
Seq C2 exon
AAAACTACCATTACTTGAATCAGTCTGGGTGTACGGAAGACAAGACGATCAGCGACCAGGAATCCTTCAGACAAGTTATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272-13-12,13-11,13-10-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAATCCCGGGGAGAGGAAT
R:
CGTCTTGTCTTCCGTACACCC
Band lengths:
117-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: