MmuALTA0011844-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000006471 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:MGI Symbol;Acc:MGI:1926047]
Coordinates
chr2:25103480-25103760:-
Coord C1 exon
chr2:25103642-25103760
Coord A exon
chr2:25103569-25103574
Coord C2 exon
chr2:25103480-25103568
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTAGCCTCTGACACCTGCAGGAG
3' ss Score
6.68
Exon sequences
Seq C1 exon
GAAACTTCTTGTTCTTTGGCTGCCGCCAGCGGGATCAGGACTTCTACTGGCAGACTGAATGGCAGAAGCTAGAGCAGAAGGGCTGGCTGACCCTGGTTACAGCCTTCTCCCGGGAGCAG
Seq A exon
GAGCAG
Seq C2 exon
AAGGTATATGTGCAGCACCGGCTTCGAGAGCTGGGGCCACTTGTCTGGGAGCTGCTGGATGGCCAAGGTGCCTACTTCTACCTAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006471-22-28,22-27-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=FE(36.4=100)
A:
NA
C2:
PF0017516=NAD_binding_1=FE(29.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGGTTACAGCCTTCTCC
R:
GAAGTAGGCACCTTGGCCATC
Band lengths:
108-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: