MmuALTA0011956-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000006476 | Nelf
Description
nasal embryonic LHRH factor [Source:MGI Symbol;Acc:MGI:1861755]
Coordinates
chr2:24915125-24915730:+
Coord C1 exon
chr2:24915125-24915214
Coord A exon
chr2:24915659-24915662
Coord C2 exon
chr2:24915663-24915730
Length
4 bp
Sequences
Splice sites
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
3' ss Seq
GTGACCCCTCCTGTCCCCAGGCA
3' ss Score
10.58
Exon sequences
Seq C1 exon
CGTTCGCTGAGCGTCGCGAACGGAGCTTCAGCCGGTCCTGGAGCGACCCCACCCCTATGAAAGCCGACACTTCCCACGACTCCCGAGACA
Seq A exon
GCAG
Seq C2 exon
TGACCTACAGAGCTCACACTGCACCCTGGATGAGGCTTGTGAGGACCTGGACTGGGACACAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006476-14-15,14-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.790 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF139501=Epimerase_Csub=PU(28.3=41.9)
A:
NA
C2:
PF139501=Epimerase_Csub=PD(69.6=76.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCCTATGAAAGCCGACAC
R:
TTCTCTGTGTCCCAGTCCAGG
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: